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         <peakRefinement>False</peakRefinement>
         <peakRefinementCrosslinking>False</peakRefinementCrosslinking>
         <isobaricSumOverWindow>True</isobaricSumOverWindow>
         <isobaricWeightExponent>0.75</isobaricWeightExponent>
         <collapseMsmsOnIsotopePatterns>False</collapseMsmsOnIsotopePatterns>
         <diaLibraryType>0</diaLibraryType>
         <diaLibraryPaths>
         </diaLibraryPaths>
         <diaEvidencePaths>
         </diaEvidencePaths>
         <diaMsmsPaths>
         </diaMsmsPaths>
         <diaLabelIndsForLibraryMatch>
         </diaLabelIndsForLibraryMatch>
         <diaInitialPrecMassTolPpm>20</diaInitialPrecMassTolPpm>
         <diaInitialFragMassTolPpm>25</diaInitialFragMassTolPpm>
         <diaCorrThresholdFeatureClustering>0.85</diaCorrThresholdFeatureClustering>
         <diaPrecTolPpmFeatureClustering>2</diaPrecTolPpmFeatureClustering>
         <diaFragTolPpmFeatureClustering>2</diaFragTolPpmFeatureClustering>
         <diaScoreN>12</diaScoreN>
         <diaScoreNAdditional>5</diaScoreNAdditional>
         <diaMinScore>1.99</diaMinScore>
         <diaXgBoostBaseScore>0.4</diaXgBoostBaseScore>
         <diaXgBoostSubSample>0.9</diaXgBoostSubSample>
         <centroidPosition>0</centroidPosition>
         <diaQuantMethod>7</diaQuantMethod>
         <diaFeatureQuantMethod>2</diaFeatureQuantMethod>
         <lfqNormType>1</lfqNormType>
         <diaTopNForQuant>12</diaTopNForQuant>
         <diaTopNCorrelatingFragmentsForQuant>7</diaTopNCorrelatingFragmentsForQuant>
         <diaFragmentCorrelationForQuant>0.78</diaFragmentCorrelationForQuant>
         <lfqUsePeptideCorrelation>True</lfqUsePeptideCorrelation>
         <lfqTopNCorrelatingPeptides>3</lfqTopNCorrelatingPeptides>
         <lfqPeptideCorrelation>3</lfqPeptideCorrelation>
         <diaMinMsmsIntensityForQuant>30</diaMinMsmsIntensityForQuant>
         <diaTopMsmsIntensityQuantileForQuant>0.85</diaTopMsmsIntensityQuantileForQuant>
         <diaMinFragmentOverlapScore>0</diaMinFragmentOverlapScore>
         <diaMinPrecursorScore>0</diaMinPrecursorScore>
         <diaUseProfileCorrelation>False</diaUseProfileCorrelation>
         <diaMinPrecProfileCorrelation>0</diaMinPrecProfileCorrelation>
         <diaMinFragProfileCorrelation>0</diaMinFragProfileCorrelation>
         <diaXgBoostMinChildWeight>9</diaXgBoostMinChildWeight>
         <diaXgBoostMaximumTreeDepth>12</diaXgBoostMaximumTreeDepth>
         <diaXgBoostEstimators>580</diaXgBoostEstimators>
         <diaXgBoostGamma>0.9</diaXgBoostGamma>
         <diaXgBoostMaxDeltaStep>3</diaXgBoostMaxDeltaStep>
         <diaGlobalMl>True</diaGlobalMl>
         <diaAdaptiveMassAccuracy>False</diaAdaptiveMassAccuracy>
         <diaMassWindowFactor>3.3</diaMassWindowFactor>
         <diaNoMl>False</diaNoMl>
         <diaPermuteRt>False</diaPermuteRt>
         <diaPermuteCcs>False</diaPermuteCcs>
         <diaBackgroundSubtraction>False</diaBackgroundSubtraction>
         <diaBackgroundSubtractionQuantile>0.5</diaBackgroundSubtractionQuantile>
         <diaBackgroundSubtractionFactor>4</diaBackgroundSubtractionFactor>
         <diaLfqRatioType>0</diaLfqRatioType>
         <diaTransferQvalue>0.3</diaTransferQvalue>
         <diaTransferQvalueBetweenLabels>0.01</diaTransferQvalueBetweenLabels>
         <diaTransferQvalueBetweenFractions>0.01</diaTransferQvalueBetweenFractions>
         <diaTransferQvalueBetweenFaims>0.01</diaTransferQvalueBetweenFaims>
         <diaOnlyIsosForRecal>True</diaOnlyIsosForRecal>
         <diaMinPeaks>5</diaMinPeaks>
         <diaUseFragIntensForMl>False</diaUseFragIntensForMl>
         <diaUseFragMassesForMl>False</diaUseFragMassesForMl>
         <diaMaxTrainInstances>500000</diaMaxTrainInstances>
         <diaMaxFragmentCharge>3</diaMaxFragmentCharge>
         <diaAdaptiveMlScoring>False</diaAdaptiveMlScoring>
         <diaDynamicScoringMaxInstances>25000</diaDynamicScoringMaxInstances>
         <diaMaxPrecursorMz>0</diaMaxPrecursorMz>
         <diaHardRtFilter>True</diaHardRtFilter>
         <diaConvertLibraryCharge2Fragments>False</diaConvertLibraryCharge2Fragments>
         <diaChargeNormalizationLibrary>False</diaChargeNormalizationLibrary>
         <diaChargeNormalizationSample>False</diaChargeNormalizationSample>
         <diaDeleteIntermediateResults>True</diaDeleteIntermediateResults>
         <diaScoreWeightScanIndex>-1</diaScoreWeightScanIndex>
         <diaScoreWeightScanValue>1</diaScoreWeightScanValue>
         <diaNumNonleadingMatches>1</diaNumNonleadingMatches>
         <diaFragmentModelType>0</diaFragmentModelType>
         <diaAltFragmentModelPath></diaAltFragmentModelPath>
         <diaUseDefaultRtModel>True</diaUseDefaultRtModel>
         <diaAltRtModelPath></diaAltRtModelPath>
         <diaUseDefaultCcsModel>True</diaUseDefaultCcsModel>
         <diaAltCcsModelPath></diaAltCcsModelPath>
         <diaBatchProcessing>True</diaBatchProcessing>
         <diaBatchSize>25</diaBatchSize>
         <diaFirstBatch>-1</diaFirstBatch>
         <diaLastBatch>-1</diaLastBatch>
         <diaOnlyPreprocess>False</diaOnlyPreprocess>
         <diaMultiplexQuantMethod>1</diaMultiplexQuantMethod>
         <diaOnlyPostprocess>False</diaOnlyPostprocess>
         <diaRequirePrecursor>False</diaRequirePrecursor>
         <diaFuturePeptides>False</diaFuturePeptides>
         <diaOverrideRtWithPrediction>False</diaOverrideRtWithPrediction>
         <diaMaxModifications>0</diaMaxModifications>
         <diaMaxPositionings>0</diaMaxPositionings>
         <diaPredictCharges>False</diaPredictCharges>
         <diaUseProbScore>False</diaUseProbScore>
         <diaProbScoreP>0.055</diaProbScoreP>
         <diaProbScoreG>1.2</diaProbScoreG>
         <diaProbScoreStep>0.1</diaProbScoreStep>
         <isM2FragTypeOverride>False</isM2FragTypeOverride>
         <ms2FragTypeOverride>0</ms2FragTypeOverride>
         <classicLfqForSingleShots>True</classicLfqForSingleShots>
         <sequenceBasedModifier>False</sequenceBasedModifier>
         <diaRtFromSamplesForExport>True</diaRtFromSamplesForExport>
         <diaCcsFromSamplesForExport>True</diaCcsFromSamplesForExport>
         <diaLibraryExport>0</diaLibraryExport>
         <diaUseApexWeightsForPtmLoc>False</diaUseApexWeightsForPtmLoc>
         <diaSecondScoreForMultiplex>True</diaSecondScoreForMultiplex>
         <diaBestPrecursorChargeForQuant>False</diaBestPrecursorChargeForQuant>
         <diaBestPrecursorMassRangeForQuant>False</diaBestPrecursorMassRangeForQuant>
         <diaBestPrecursorIntensityForQuant>False</diaBestPrecursorIntensityForQuant>
         <diaPtmLocMethod>1</diaPtmLocMethod>
         <diaIndexedSearch>True</diaIndexedSearch>
         <diaIncreaseSequenceCoverage>True</diaIncreaseSequenceCoverage>
         <diaSequenceCoverageFdr>0.05</diaSequenceCoverageFdr>
         <diaHasIntensitiesForMl>True</diaHasIntensitiesForMl>
         <diaFdrCvIncludeCharge>True</diaFdrCvIncludeCharge>
      </parameterGroup>
   </parameterGroups>
   <msmsParamsArray>
      <msmsParams>
         <Name>FTMS</Name>
         <MatchTolerance>20</MatchTolerance>
         <MatchToleranceInPpm>True</MatchToleranceInPpm>
         <DeisotopeTolerance>7</DeisotopeTolerance>
         <DeisotopeToleranceInPpm>True</DeisotopeToleranceInPpm>
         <DeNovoTolerance>25</DeNovoTolerance>
         <DeNovoToleranceInPpm>True</DeNovoToleranceInPpm>
         <Deisotope>True</Deisotope>
         <Topx>12</Topx>
         <TopxInterval>100</TopxInterval>
         <HigherCharges>True</HigherCharges>
         <IncludeWater>True</IncludeWater>
         <IncludeAmmonia>True</IncludeAmmonia>
         <IncludeWaterCross>False</IncludeWaterCross>
         <IncludeAmmoniaCross>False</IncludeAmmoniaCross>
         <DependentLosses>True</DependentLosses>
         <Recalibration>False</Recalibration>
      </msmsParams>
      <msmsParams>
         <Name>ITMS</Name>
         <MatchTolerance>0.5</MatchTolerance>
         <MatchToleranceInPpm>False</MatchToleranceInPpm>
         <DeisotopeTolerance>0.15</DeisotopeTolerance>
         <DeisotopeToleranceInPpm>False</DeisotopeToleranceInPpm>
         <DeNovoTolerance>0.5</DeNovoTolerance>
         <DeNovoToleranceInPpm>False</DeNovoToleranceInPpm>
         <Deisotope>False</Deisotope>
         <Topx>8</Topx>
         <TopxInterval>100</TopxInterval>
         <HigherCharges>True</HigherCharges>
         <IncludeWater>True</IncludeWater>
         <IncludeAmmonia>True</IncludeAmmonia>
         <IncludeWaterCross>False</IncludeWaterCross>
         <IncludeAmmoniaCross>False</IncludeAmmoniaCross>
         <DependentLosses>True</DependentLosses>
         <Recalibration>False</Recalibration>
      </msmsParams>
      <msmsParams>
         <Name>TOF</Name>
         <MatchTolerance>25</MatchTolerance>
         <MatchToleranceInPpm>True</MatchToleranceInPpm>
         <DeisotopeTolerance>0.01</DeisotopeTolerance>
         <DeisotopeToleranceInPpm>False</DeisotopeToleranceInPpm>
         <DeNovoTolerance>25</DeNovoTolerance>
         <DeNovoToleranceInPpm>True</DeNovoToleranceInPpm>
         <Deisotope>True</Deisotope>
         <Topx>16</Topx>
         <TopxInterval>100</TopxInterval>
         <HigherCharges>True</HigherCharges>
         <IncludeWater>True</IncludeWater>
         <IncludeAmmonia>True</IncludeAmmonia>
         <IncludeWaterCross>False</IncludeWaterCross>
         <IncludeAmmoniaCross>False</IncludeAmmoniaCross>
         <DependentLosses>True</DependentLosses>
         <Recalibration>False</Recalibration>
      </msmsParams>
      <msmsParams>
         <Name>UNKNOWN</Name>
         <MatchTolerance>20</MatchTolerance>
         <MatchToleranceInPpm>True</MatchToleranceInPpm>
         <DeisotopeTolerance>7</DeisotopeTolerance>
         <DeisotopeToleranceInPpm>True</DeisotopeToleranceInPpm>
         <DeNovoTolerance>25</DeNovoTolerance>
         <DeNovoToleranceInPpm>True</DeNovoToleranceInPpm>
         <Deisotope>True</Deisotope>
         <Topx>12</Topx>
         <TopxInterval>100</TopxInterval>
         <HigherCharges>True</HigherCharges>
         <IncludeWater>True</IncludeWater>
         <IncludeAmmonia>True</IncludeAmmonia>
         <IncludeWaterCross>False</IncludeWaterCross>
         <IncludeAmmoniaCross>False</IncludeAmmoniaCross>
         <DependentLosses>True</DependentLosses>
         <Recalibration>False</Recalibration>
      </msmsParams>
   </msmsParamsArray>
   <fragmentationParamsArray>
      <fragmentationParams>
         <Name>HCD</Name>
         <UseIntensityPrediction>False</UseIntensityPrediction>
         <UseSequenceBasedModifier>False</UseSequenceBasedModifier>
         <InternalFragments>False</InternalFragments>
         <InternalFragmentWeight>1</InternalFragmentWeight>
         <InternalFragmentAas>KRH</InternalFragmentAas>
      </fragmentationParams>
      <fragmentationParams>
         <Name>CID</Name>
         <UseIntensityPrediction>False</UseIntensityPrediction>
         <UseSequenceBasedModifier>False</UseSequenceBasedModifier>
         <InternalFragments>False</InternalFragments>
         <InternalFragmentWeight>1</InternalFragmentWeight>
         <InternalFragmentAas>KRH</InternalFragmentAas>
      </fragmentationParams>
      <fragmentationParams>
         <Name>ETD</Name>
         <UseIntensityPrediction>False</UseIntensityPrediction>
         <UseSequenceBasedModifier>False</UseSequenceBasedModifier>
         <InternalFragments>False</InternalFragments>
         <InternalFragmentWeight>1</InternalFragmentWeight>
         <InternalFragmentAas>KRH</InternalFragmentAas>
      </fragmentationParams>
      <fragmentationParams>
         <Name>PQD</Name>
         <UseIntensityPrediction>False</UseIntensityPrediction>
         <UseSequenceBasedModifier>False</UseSequenceBasedModifier>
         <InternalFragments>False</InternalFragments>
         <InternalFragmentWeight>1</InternalFragmentWeight>
         <InternalFragmentAas>KRH</InternalFragmentAas>
      </fragmentationParams>
      <fragmentationParams>
         <Name>ETHCD</Name>
         <UseIntensityPrediction>False</UseIntensityPrediction>
         <UseSequenceBasedModifier>False</UseSequenceBasedModifier>
         <InternalFragments>False</InternalFragments>
         <InternalFragmentWeight>1</InternalFragmentWeight>
         <InternalFragmentAas>KRH</InternalFragmentAas>
      </fragmentationParams>
      <fragmentationParams>
         <Name>ETCID</Name>
         <UseIntensityPrediction>False</UseIntensityPrediction>
         <UseSequenceBasedModifier>False</UseSequenceBasedModifier>
         <InternalFragments>False</InternalFragments>
         <InternalFragmentWeight>1</InternalFragmentWeight>
         <InternalFragmentAas>KRH</InternalFragmentAas>
      </fragmentationParams>
      <fragmentationParams>
         <Name>UVPD</Name>
         <UseIntensityPrediction>False</UseIntensityPrediction>
         <UseSequenceBasedModifier>False</UseSequenceBasedModifier>
         <InternalFragments>False</InternalFragments>
         <InternalFragmentWeight>1</InternalFragmentWeight>
         <InternalFragmentAas>KRH</InternalFragmentAas>
      </fragmentationParams>
      <fragmentationParams>
         <Name>Unknown</Name>
         <UseIntensityPrediction>False</UseIntensityPrediction>
         <UseSequenceBasedModifier>False</UseSequenceBasedModifier>
         <InternalFragments>False</InternalFragments>
         <InternalFragmentWeight>1</InternalFragmentWeight>
         <InternalFragmentAas>KRH</InternalFragmentAas>
      </fragmentationParams>
   </fragmentationParamsArray>
</MaxQuantParams>